Genome assembly used for the atlas

Leptinotarsa_decemlineata_01.fa. This version is an update from the genome assembled by Yan et al. 2023 Sci Data. Contaminating contigs from bacteria have been removed.

The former versions of the genome and annotation are available at the adress https://cpb-atlas.uni-mainz.de/media/genome_annotation/.

Gene prediction

LdNA_01.gff3

Proteome

LdNA_01.aa.fa

Functional annotation

The functional annotation comprises a BLAST and an Interproscan annotations, GO terms and KEGG orthologs.
LdNA_01b.aa.fa.func_anno.txt

Complete table of expression values in transcript per million (TPM)

Note: This table contains two outlier samples which have not been included in the atlas: HF5 and YFB4.
Counts_tpm_filtered.txt

The correspondence between sample names and tissues or developmental stages is available in this table:
sample_name2sample_type.txt

WGCNA results

Geneid2modules.txt Correspondance between the genes expressed in adults and L4 larvae with the module they belong to.

Tissue specificity results

Geneid2tissues.txt Correspondance between the genes and the tissue(s) to which they are specific.

GO enrichment of the tissue-specific genes

GOenrich_tissue_molfunct.txt GO enrichment for the Molecular Function Ontology.
GOenrich_tissue_biolproc.txt GO enrichment for the Biological Process Ontology